Settings are generally grouped by prefix and sometimes by topic. If you are looking for information on a specific setting, then you may wish to browse alphabetically A to G, H to R, or S to Z. Settings can be modifed with set and unset and queried with get.
Molecules: Lines | Sticks | Ribbons | Cartoons | Labels | Spheres | Nonbonded | Ellipsoids
Surfaces & Fields: Dots | Meshes | Surfaces | Slices | Gradients | Volumes
Camera | Lighting | Background | Colors | Ray | Scenes | States & Movies | Grid Mode | Stereo | Transparency | Rocking | Shaders | Drawing |
Bonds | Hydrogen Bonds | Secondary Structure | Superposition | Sculpting | Gaussians | Coulomb Electrostatics | Stereochemistry | Small Molecule Cleanup
Automatic Actions | PDB Files | Maps | Images | Logging | Session Files | Other 3D Formats
Multithreading | Memory & Performance | External Processes | Internal GUI | Troubleshooting & Debugging | Synchronization | Obsolete