Overview
Object morphing is now easy to do. You can easily morph:
with just a few clicks.
PyMOL now offers the morphing menu: A > Action > Generate > Morph > …
Morphing Between Objects
Align your two structures
Select A > Action > Generate > Morph > To Molecule > …
Choose your target molecule
Morphing Between States
For your multistate structure, select A > Action > Generate > Morph > States > … then choose your desired option:
The options are to morph:
first state to second
first state directly to last
first state to last, visiting each intervening state
first state to last, visiting each intervening state and then back to the first