“load_embedded” loads content previously defined in the current PyMOL command script using the “embed” command.
load_embedded [ key [, name [, state [, finish [, discrete [, quiet ]]]]]]
embed wats, pdb HETATM 1 O WAT 1 2.573 -1.034 -1.721 HETATM 2 H1 WAT 1 2.493 -1.949 -1.992 HETATM 3 H2 WAT 1 2.160 -0.537 -2.427 HETATM 4 O WAT 2 0.705 0.744 0.160 HETATM 5 H1 WAT 2 -0.071 0.264 0.450 HETATM 6 H2 WAT 2 1.356 0.064 -0.014 embed end load_embedded wats
This approach only works with text data files.