Commands

PyMOL contains an overwhelming number of commands, so we recommend that you first learn the core set of commands and then expand outward from there as your needs dictate.

A complete alphabetical list of commands is also available, and the concept of a command is also discussed.

See also: http://pymol.org/pymol-command-ref.html

Input, Output, & Organization

Colors & Rendering

Settings and Configuration

Molecular Representations

View Control

Alignment, Superposition, & Matrices

Measurements

Crystallography

Potentials and Isosurfaces

Movies

Scripting

Molecular Editing & Chemistry

Molecular Sculpting (Experimental / Unsupported)

Deprecated, Unsupported, or Rarely Useful Commands

 
command.txt
 
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