• Fully dynamic measures (see demo [32MB MP4])
  
• A > Generate > Selection > Surface Residues
• Fixed dihedral bug

Released Aug 6, 2010

• Updated the fetch command to work with new server paths, internationally
• Updated the fetch command to handle all forms of biological units “pdb1,” “pdb2,” “pdb3,” etc.
• Corrected mis-matched map naming in fetch
• Added filtering step in File>Save Molecule…
• Added mouse-mode tracking, improved neighbor finding, mixed-mode measurements to the Measurement Wizard
• Fixed setup.sh

Released May, 2010

Cealign:

• cealign – cealign is a new command that performs protein structure alignment using the CE algorithm.

Fetch:

• fetch – This command has the new capability of downloading omit maps from the EDS server. To download a map, supply the type=mapType flag to PyMOL, where mapType={“fofc”, “2fofc”} is the type of map you want. Here's an example:

# fetch the protein 1CLL
fetch 1cll;

# now fetch its map
fetch 1cll, type=2fofc

Obscure:

• obscure 1: introduction to the 'obscure' command (1280x720 HD).
  
• obscure 2: command options for the 'obscure' command (1280x720 HD).
  

• fetch_host: set to “pdb” to download from pdb.org; “pdbe” to download from European PDB server, or “pdbj” for Japanese PDB server.
• movie_quality: set to any value between 1 and 100. The higher the better the final movie quality; 60 is default.
• neighbor_cutoff: cutoff for finding neighbors in measurements wizard; defaults to 3.5 Angstroms.
• polar_neighbor_cutoff: cutoff for finding polar neighbors in measurements wizard; defaults to 3.5 Angstroms.
• heavy_neighbor_cutoff: cutoff for finding heavy neighbors in measurements wizard; defaults to 3.5 Angstroms.
• label_anchor: set to “CA” for alpha carbon, “CB” for beta carbon; determines where residues are labeled by default.
• dynamic distances: introduction to dynamic_measures setting (1280x720 HD).
  

• See what's new with the APBS Plugin