PyMOL v1.3r2 (Dec. 2010)
Released Aug 6, 2010
Updated the fetch command to work with new server paths, internationally
Updated the fetch command to handle all forms of biological units “pdb1,” “pdb2,” “pdb3,” etc.
Corrected mis-matched map naming in fetch
Added filtering step in File>Save Molecule…
Added mouse-mode tracking, improved neighbor finding, mixed-mode measurements to the Measurement Wizard
New and Modified Commands
– cealign is a new command that performs protein structure alignment using the CE
– This command has the new capability of downloading omit maps from the EDS server. To download a map, supply the
flag to PyMOL, where
is the type of map you want. Here's an example:
# fetch the protein 1CLL
# now fetch its map
fetch 1cll, type=2fofc
: introduction to the 'obscure' command (1280x720 HD).
: command options for the 'obscure' command (1280x720 HD).
: set to “pdb” to download from pdb.org; “pdbe” to download from European PDB server, or “pdbj” for Japanese PDB server.
: set to any value between 1 and 100. The higher the better the final movie quality; 60 is default.
: cutoff for finding neighbors in measurements wizard; defaults to 3.5 Angstroms.
: cutoff for finding polar neighbors in measurements wizard; defaults to 3.5 Angstroms.
: cutoff for finding heavy neighbors in measurements wizard; defaults to 3.5 Angstroms.
: set to “CA” for alpha carbon, “CB” for beta carbon; determines where residues are labeled by default.
APBS Plugin v2.0