“embed” delimits a block of data embedded in a PyMOL command script.

embed key [, type [, sentinel ]]

key = string: unique indentifier for the data

type = pdb, mol, mol2, sdf, xplor

sentinel = string: a unique string signalling the end of the data {default: embed end}

embed wats, pdb 
HETATM    1  O   WAT     1       2.573  -1.034  -1.721 
HETATM    2  H1  WAT     1       2.493  -1.949  -1.992 
HETATM    3  H2  WAT     1       2.160  -0.537  -2.427 
HETATM    4  O   WAT     2       0.705   0.744   0.160 
HETATM    5  H1  WAT     2      -0.071   0.264   0.450 
HETATM    6  H2  WAT     2       1.356   0.064  -0.014 
embed end 

Only text data formats can be used with embed

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