The idea behind JyMOL is to expose PyMOL's native C molecular graphics and rendering code to Java-based applications.

JavaDoc format documentation is available.

If you are a Java developer, you are welcome to download a fully-functional evaluation copy of JyMOL from http://pymol.org/jymol.

JyMol is a closed-source proprietary product derived from Open Source PyMOL.

Java Integration