setting:mesh

Meshes

mesh_carve_cutoff (float, default: 0.0) carves all mesh beyond this cutoff from the value in mesh_carve_selection

mesh_carve_selection (string, default: 0.0) the selection about which to carve the mesh representation.

mesh_carve_state (integer, default: 0.0) the state from which to carve meshes.

mesh_clear_cutoff (float, default: 0.0)

mesh_carve_selection (float, default: 0.0)

mesh_clear_state (integer, default: 0) the state from which to carve meshes.

mesh_color (color, default: -1) is the color of the mesh representation.

mesh_cutoff – see surface_carve_cutoff.

mesh_grid_max

mesh_lighting – see obsolete

mesh_mode (integer, default: 0) controls what atoms are considered when generating the mesh:
- 0 = consider atoms based on their ignore and exfoliate flags.
- 1 = consider all atoms
- 2 = condider only non-hydrogen atoms

mesh_negative_color (color, default: default) inside mesh color

mesh_negative_visible (boolean, default: true) controls whether or not the inside of the mesh is shown.

mesh_normals – see obsolete

mesh_quality (integer, default: 2) is a tuning parameter that should not need to be modified.

mesh_radius (float, default: 0.0) if greater than zero, controls the radius of the mesh representation when ray tracing. Otherwise, the radius is computed from mesh_width.

mesh_skip (integer, default: 0)

mesh_solvent (boolean, default: off) controls whether the mesh is generated for a solvent accessible surface as opposed to the default molecular surface.

mesh_type (integer: 0-1,default: 0) controls what type of mesh is generated:
- 0 = wire
- 1 = points

mesh_width (float, default: 1.0) controls the default width of the mesh.

min_mesh_spacing (float, default: 0.6) controls the minimum mesh spacing.

setting/mesh.txt · Last modified: 2013/11/06 22:51 by vertrees