Sequence Viewer

  • seq_view (boolean, default: off) controls whether or not the sequence viewer is active.
  • seq_view_alignment (string, default: blank) currently unsupported.
  • seq_view_color (color, default: -1) controls the color of the sequence view (default = atom colors).
  • seq_view_discrete_by_state currently unsupported.
  • seq_view_fill_char currently unsupported.
  • seq_view_fill_color currently unsupported.
  • seq_view_format (integer, default: 0) controls the format of the sequence viewer.
    • 0 = one-letter residue codes (if known)
    • 1 = residue codes
    • 2 = atoms
    • 3 = chains
    • 4 = states
  • seq_view_label_color (color, default: white) controls the color of label text.
  • seq_view_label_mode (integer, default: 2) controls what labels are shown:
    • 0 = object names only
    • 1 = object names and identifier labels for first object only
    • 2 = object names and identifier labels for all objects
    • 3 = nothing
  • seq_view_label_spacing (integer, default: 2) affects the spacing of labels.
  • seq_view_label_start (integer, default: 1) function unknown.
  • seq_view_location (integer, default: 0) controls the location of the sequence viewer.
    • 0 = top
    • 1 = bottom
  • seq_view_overlay (boolean, default: off) controls whether or not the sequence view overlays the 3D molecular graphics.
  • seq_view_unaligned_color (color, default: -1) currently unsupported.
  • seq_view_unaligned_mode (integer, default: 0) currently unsupported.
 
setting/seq_view.txt
 
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