PyMOL for Maestro
PyMOL for Maestro is a free plug-in for Maestro that allows you to send molecular data - including atom coordinates and representations - seamlessly from Schrödinger's Maestro interface to PyMOL. PyMOL for Maestro is intended for current Schrödinger customers who are also using PyMOL.
Installation for Maestro 9.1 and later
The pymol4maestro.py script is included with PyMOL 1.2 and newer. For users of Maestro 9.1 and later, this script is automatically installed with Maestro and can be accessed by selecting "PyMOL..." from the Maestro menu. The PyMOL for Maestro panel will then be displayed in the lower right-hand corner of your screen:
To send Maestro content into PyMOL, select either the "Workspace" or "Selected Entries" button.
Thank you for using PyMOL for Maestro!
Installation for Maestro 9.0
For Maestro 9.0 users, the pymol4maestro.py script is included with Maestro but must be manually installed in order to activate it. Please make sure you are using PyMOL 1.2 or newer.
On both Windows and Linux, you will need to launch Maestro 9.0 before installing this script. Once Maestro is launched, go to the "Scripts" menu and choose the "Install..." option. Click "Browse" to nagivate to the "maestro" folder.
For Windows users, the script will be located in:
C:\Program Files\PyMOL\PyMOL\scripts\maestro
For Linux users, the script will be unpacked from the PyMOL tar-gzip file into the following subdirectory:
scripts/maestro
Once you have navigated to the correct folder, select the script and click "Choose", then click the checkbox under "Install" next to the pymol4maestro.py script. Select "OK" to initiate the install.
Once PyMOL for Maestro is installed, it can be launched via the Scripts menu as shown below:
The PyMOL for Maestro panel will be displayed in the lower right-hand corner of your screen:
To send Maestro content into PyMOL, select either the "Workspace" or "Selected Entries" button.
Thank you for using PyMOL for Maestro!
Feedback
We encourage your feedback on PyMOL for Maestro as we work to improve interoperability between Schrödinger products and PyMOL. Please e-mail your thoughts to help@schrodinger.com, Schrödinger's online support system.