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command:super

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super

NOTE: This feature is experimental and unsupported.

“super” performs a residue-based pairwise alignment followed by a structural superposition, and then carries out zero or more cycles of refinement in order to reject outliers.

Usage

super mobile, target [, object=name ]

Example

super protA////CA, protB////CA, object=supeAB 

Notes

By adjusting various parameters, the nature of the initial alignment can be modified to include or exclude various factors including sequence similarity, main chain path, secondary & tertiary structure, and current coordinates.

See Also

command/super.txt · Last modified: 2013/08/19 21:00 (external edit)