External Resources

  • batch_prefix (string, default: tmp_pymol) contains a prefix to be used for temporary files.
  • fetch_host (string, default: pdb; valid values: pdb, pdbe, pdbj) Controls the server from which PDB are fetched. Specify the European PDB server with ‘pdbe’ and the Japanese PDB server with ‘pdbj’. This setting defaults to the US server.
  • fetch_path (string, default: .) is the default location for files obtained via the fetch command.
  • keep_alive (boolean, default: false) when running without a GUI, don’t quit after the input is exhausted
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