Advanced Scripting Workshop

Exercises

1. Interactive Command Line
2. How to run scripts
3. Figure scripting by example
4. Interactive Automation with hotkeys
5. pymolrc startup script
6. Access and modify atom data with iterate and alter
7. Write PyMOL extensions
8. Anaconda Cloud with PyMOL 2.0

Sample solutions

Print versions (A4): Part 1 Part 3

Relevant References

• List of commands
  • https://pymol.org/pymol-command-ref.html
  • https://pymol.org/d/command
• List of API functions
  • https://pymol.org/pymol-api-only.html
  • https://pymol.org/d/api
• List of selection operators:
  • https://pymolwiki.org/index.php/Selection_Algebra (print version)
  • https://pymol.org/d/selection
• List of settings:
  • From the PyMOL menu: Setting > Edit All...
  • https://pymolwiki.org/index.php/Category:Settings
  • https://pymol.org/d/setting

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